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    SHLD1 shieldin complex subunit 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718152, updated on 5-Mar-2024

    Summary

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    Gene symbol
    SHLD1
    Gene description
    shieldin complex subunit 1
    See related
    Ensembl:ENSMMUG00000056093
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    C10H20orf196
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See SHLD1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (60651458..60762938, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (38605051..38721245)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene chromogranin B Neighboring gene uncharacterized LOC114670614 Neighboring gene glycerophosphocholine phosphodiesterase 1 Neighboring gene eukaryotic translation initiation factor 4E pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of double-strand break repair via nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of isotype switching IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    shieldin complex subunit 1
    Names
    uncharacterized protein C20orf196

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260687.1 → NP_001247616.1  shieldin complex subunit 1

      See identical proteins and their annotated locations for NP_001247616.1

      Status: PROVISIONAL

      Source sequence(s)
      JV045279
      UniProtKB/TrEMBL
      A0A5F7ZTS2, F6ZCL0, G7N2X3
      Related
      ENSMMUP00000068568.1, ENSMMUT00000084883.1
      Conserved Domains (1) summary
      pfam15021
      Location:3 → 201
      DUF4521; Protein of unknown function (DUF4521)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      60651458..60762938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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