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    RBCK1 RANBP2-type and C3HC4-type zinc finger containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714692, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RBCK1provided by VGNC
    Official Full Name
    RANBP2-type and C3HC4-type zinc finger containing 1provided by VGNC
    Primary source
    VGNC:VGNC:81554
    See related
    Ensembl:ENSMMUG00000012601
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RBCK1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (66138851..66160803, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (33163339..33184749)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene casein kinase 2 alpha 1 Neighboring gene TBC1 domain family member 20 Neighboring gene tribbles pseudokinase 3 Neighboring gene neurensin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein linear polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of LUBAC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ranBP-type and C3HC4-type zinc finger-containing protein 1
    NP_001253226.1
    XP_015004777.1
    XP_015004778.1
    XP_028683206.1
    XP_028683208.1
    XP_028683209.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266297.1 → NP_001253226.1  ranBP-type and C3HC4-type zinc finger-containing protein 1

      See identical proteins and their annotated locations for NP_001253226.1

      Status: PROVISIONAL

      Source sequence(s)
      JU332555
      UniProtKB/TrEMBL
      A0A5K1VSV4, G7N2P6
      Related
      ENSMMUP00000062089.1, ENSMMUT00000094268.1
      Conserved Domains (5) summary
      cd01799
      Location:57 → 131
      Hoil1_N; Ubiquitin-like domain of HOIL1
      smart00547
      Location:197 → 217
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:197 → 216
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam01485
      Location:370 → 404
      IBR; IBR domain, a half RING-finger domain
      pfam13445
      Location:282 → 324
      zf-RING_UBOX; RING-type zinc-finger

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      66138851..66160803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149291.2 → XP_015004777.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F7F9I1, F7F9X2
      Related
      ENSMMUP00000016539.4, ENSMMUT00000017662.4
      Conserved Domains (5) summary
      smart00547
      Location:155 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:155 → 174
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd16633
      Location:236 → 290
      mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      cd01799
      Location:11 → 91
      Ubl_HOIL1; ubiquitin-like (Ubl) domain found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      pfam01485
      Location:328 → 362
      IBR; IBR domain, a half RING-finger domain

    2. XM_028827375.1 → XP_028683208.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5R9V2, F7CKH7, H9FNV1
      Related
      ENSMMUP00000057093.1, ENSMMUT00000078310.2
      Conserved Domains (3) summary
      PHA03307
      Location:17 → 137
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam01485
      Location:200 → 234
      IBR; IBR domain, a half RING-finger domain
      cl17238
      Location:136 → 162
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. XM_028827373.1 → XP_028683206.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X2

      Conserved Domains (3) summary
      PHA03307
      Location:17 → 147
      PHA03307; transcriptional regulator ICP4; Provisional
      cd16633
      Location:192 → 246
      mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      pfam01485
      Location:284 → 318
      IBR; IBR domain, a half RING-finger domain

    4. XM_015149292.2 → XP_015004778.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X3

      Conserved Domains (5) summary
      smart00547
      Location:197 → 217
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:197 → 216
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd16633
      Location:278 → 332
      mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      cd01799
      Location:53 → 133
      Ubl_HOIL1; ubiquitin-like (Ubl) domain found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      pfam01485
      Location:348 → 404
      IBR; IBR domain, a half RING-finger domain

    5. XM_028827376.1 → XP_028683209.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X5

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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