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    TRPC1 transient receptor potential cation channel subfamily C member 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714334, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRPC1provided by VGNC
    Official Full Name
    transient receptor potential cation channel subfamily C member 1provided by VGNC
    Primary source
    VGNC:VGNC:78651
    See related
    Ensembl:ENSMMUG00000012405
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TRPC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (44836535..44919096)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (159054277..159136578, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 1 pseudogene Neighboring gene ATR serine/threonine kinase Neighboring gene plastin 1 Neighboring gene U7 small nuclear RNA Neighboring gene 60S ribosomal protein L8 pseudogene Neighboring gene procollagen C-endopeptidase enhancer 2 Neighboring gene uncharacterized LOC106997091

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short transient receptor potential channel 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260937.1 → NP_001247866.1  short transient receptor potential channel 1

      See identical proteins and their annotated locations for NP_001247866.1

      Status: PROVISIONAL

      Source sequence(s)
      JU336174
      UniProtKB/TrEMBL
      A0A5F7ZI95, H9FZ68
      Related
      ENSMMUP00000064356.1, ENSMMUT00000102975.1
      Conserved Domains (2) summary
      TIGR00870
      Location:47 → 739
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:82 → 116
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      44836535..44919096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015131919.2 → XP_014987405.1  short transient receptor potential channel 1 isoform X1

      UniProtKB/TrEMBL
      F7EA78
      Related
      ENSMMUP00000016288.3, ENSMMUT00000017393.4
      Conserved Domains (1) summary
      TIGR00870
      Location:98 → 814
      trp; transient-receptor-potential calcium channel protein

    2. XM_015131921.2 → XP_014987407.1  short transient receptor potential channel 1 isoform X2

      UniProtKB/TrEMBL
      F7EA78
      Conserved Domains (2) summary
      TIGR00870
      Location:98 → 780
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:77 → 121
      ANK; ANK repeat [structural motif]

    3. XM_015131922.2 → XP_014987408.1  short transient receptor potential channel 1 isoform X3

      UniProtKB/TrEMBL
      F7EA78
      Conserved Domains (1) summary
      TIGR00870
      Location:47 → 773
      trp; transient-receptor-potential calcium channel protein

    4. XM_015131924.2 → XP_014987410.1  short transient receptor potential channel 1 isoform X5

      UniProtKB/TrEMBL
      G7MJL4
      Conserved Domains (1) summary
      TIGR00870
      Location:25 → 642
      trp; transient-receptor-potential calcium channel protein

    5. XM_028843365.1 → XP_028699198.1  short transient receptor potential channel 1 isoform X6

      UniProtKB/TrEMBL
      G7MJL4
      Conserved Domains (1) summary
      TIGR00870
      Location:61 → 624
      trp; transient-receptor-potential calcium channel protein

    6. XM_015131923.2 → XP_014987409.1  short transient receptor potential channel 1 isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZI95
      Conserved Domains (1) summary
      TIGR00870
      Location:14 → 676
      trp; transient-receptor-potential calcium channel protein

    7. XM_028843363.1 → XP_028699196.1  short transient receptor potential channel 1 isoform X6

      UniProtKB/TrEMBL
      G7MJL4
      Conserved Domains (1) summary
      TIGR00870
      Location:61 → 624
      trp; transient-receptor-potential calcium channel protein

    8. XM_028843364.1 → XP_028699197.1  short transient receptor potential channel 1 isoform X6

      UniProtKB/TrEMBL
      G7MJL4
      Conserved Domains (1) summary
      TIGR00870
      Location:61 → 624
      trp; transient-receptor-potential calcium channel protein
    Nucleotide Protein
    Heading Accession and Version

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