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    LOC702071 protocadherin gamma-A6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702071, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC702071
    Gene description
    protocadherin gamma-A6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    PCDHGC3; PCDHGC4; PCDHGC5
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    Genomic context

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    See LOC702071 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (138741305..138890741)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (139087171..139275441)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene protocadherin gamma-B2 Neighboring gene protocadherin gamma-A5 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene protocadherin gamma-A8 Neighboring gene protocadherin gamma-A7 Neighboring gene protocadherin gamma subfamily B, 4 Neighboring gene protocadherin gamma subfamily B, 5 Neighboring gene protocadherin gamma subfamily B, 6 Neighboring gene protocadherin gamma subfamily A, 10 Neighboring gene protocadherin gamma subfamily A, 11 Neighboring gene protocadherin gamma subfamily B, 7 Neighboring gene protocadherin gamma subfamily A, 12 Neighboring gene protocadherin gamma subfamily C, 3 Neighboring gene protocadherin gamma subfamily C, 4 Neighboring gene protocadherin gamma subfamily C, 5 Neighboring gene diaphanous related formin 1 Neighboring gene ubiquitin-40S ribosomal protein S27a pseudogene Neighboring gene histone deacetylase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: protocadherin gamma-A6
    Names
    protocadherin gamma-C3
    protocadherin gamma-C4
    protocadherin gamma-C5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      138741305..138890741
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028850109.1 → XP_028705942.1  LOW QUALITY PROTEIN: protocadherin gamma-A6

      Conserved Domains (4) summary
      cd11304
      Location:1068 → 1165
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam15974
      Location:1633 → 1727
      Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
      pfam08266
      Location:853 → 934
      Cadherin_2; Cadherin-like
      pfam16492
      Location:1510 → 1594
      Cadherin_C_2; Cadherin cytoplasmic C-terminal
    Nucleotide Protein
    Heading Accession and Version

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