U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SLITRK3 SLIT and NTRK like family member 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700660, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SLITRK3provided by VGNC
    Official Full Name
    SLIT and NTRK like family member 3provided by VGNC
    Primary source
    VGNC:VGNC:77761
    Locus tag
    EGK_11934
    See related
    Ensembl:ENSMMUG00000011050
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SLITRK3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (69777886..69788350, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (129156314..129166725)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene neugrin-like Neighboring gene uncharacterized LOC106997013 Neighboring gene sucrase-isomaltase Neighboring gene butyrylcholinesterase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of synapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of presynapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in GABA-ergic synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    SLIT and NTRK-like protein 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      69777886..69788350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843825.1 → XP_028699658.1  SLIT and NTRK-like protein 3

      UniProtKB/TrEMBL
      A0A663D6C6, A0A8J8YQ26, F7GMP9, G7MJD3
      Conserved Domains (3) summary
      smart00082
      Location:562 → 597
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:81 → 102
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:105 → 161
      LRR_8; Leucine rich repeat

    2. XM_015131687.2 → XP_014987173.1  SLIT and NTRK-like protein 3

      UniProtKB/TrEMBL
      A0A663D6C6, A0A8J8YQ26, F7GMP9, G7MJD3
      Related
      ENSMMUP00000014471.3, ENSMMUT00000015448.4
      Conserved Domains (3) summary
      smart00082
      Location:562 → 597
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:81 → 102
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:105 → 161
      LRR_8; Leucine rich repeat

    3. XM_015131686.2 → XP_014987172.1  SLIT and NTRK-like protein 3

      UniProtKB/TrEMBL
      A0A663D6C6, A0A8J8YQ26, F7GMP9, G7MJD3
      Conserved Domains (3) summary
      smart00082
      Location:562 → 597
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:81 → 102
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:105 → 161
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials