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    CMU_032030 U5 small nuclear ribonucleoprotein subunit, putative [ Cryptosporidium muris RN66 ]

    Gene ID: 6997452, updated on 17-May-2024

    Summary

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    Gene symbol
    CMU_032030
    Gene description
    U5 small nuclear ribonucleoprotein subunit, putative
    Locus tag
    CMU_032030
    See related
    CryptoDB:CMU_032030; VEuPathDB:CMU_032030
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cryptosporidium muris RN66 (strain: RN66)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium
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    Genomic context

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    See CMU_032030 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_002196580.1Genomic Context describing neighboring genes Neighboring gene Nuf2 family protein Neighboring gene uncharacterized protein Neighboring gene 60S ribosomal protein L30, putative Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002196580.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Miscellaneous features

    • Loc: 272851-272881 AT_rich

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U5 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U5 small nuclear ribonucleoprotein subunit, putative
    XP_002142411.1
    • encoded by transcript CMU_032030A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002196580.1 Reference assembly

      Range
      272216..275344
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002142375.1 → XP_002142411.1  U5 small nuclear ribonucleoprotein subunit, putative [Cryptosporidium muris RN66]

      See identical proteins and their annotated locations for XP_002142411.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B6AIM1
      Conserved Domains (7) summary
      cd04167
      Location:149 → 354
      Snu114p; Snu114p, a spliceosome protein, is a GTPase
      cd01683
      Location:730 → 912
      EF2_IV_snRNP; EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. ...
      cd04098
      Location:907 → 986
      eEF2_C_snRNP; eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the ...
      PTZ00416
      Location:131 → 1032
      PTZ00416; elongation factor 2; Provisional
      pfam16004
      Location:5 → 126
      EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
      cd04090
      Location:509 → 600
      EF2_II_snRNP; Domain II of the spliceosomal 116kD U5 small nuclear ribonucleoprotein (snRNP) component
      cl20541
      Location:660 → 730
      EFG_III-like; Domain III of Elongation factor G (EF-G) and related proteins
    Nucleotide Protein
    Heading Accession and Version

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