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    Ms4a20 membrane-spanning 4-domains, subfamily A, member 20 [ Mus musculus (house mouse) ]

    Gene ID: 69369, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ms4a20provided by MGI
    Official Full Name
    membrane-spanning 4-domains, subfamily A, member 20provided by MGI
    Primary source
    MGI:MGI:1916619
    See related
    Ensembl:ENSMUSG00000024729 AllianceGenome:MGI:1916619
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700017D01Rik
    Expression
    Restricted expression toward testis adult (RPKM 100.8) See more
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    Genomic context

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    See Ms4a20 in Genome Data Viewer
    Location:
    19 A; 19 7.68 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11074178..11108253, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11096814..11130889, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene membrane-spanning 4-domains, subfamily A, member 8A Neighboring gene STARR-seq mESC enhancer starr_45564 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 pseudogene Neighboring gene NS1-associated protein 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_45565 Neighboring gene membrane-spanning 4-domains, subfamily A, member 19 Neighboring gene membrane-spanning 4-domains, subfamily A, member 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC69369

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027058.1 → NP_081334.1  uncharacterized protein LOC69369

      See identical proteins and their annotated locations for NP_081334.1

      Status: VALIDATED

      Source sequence(s)
      AK006056, BU938748
      Consensus CDS
      CCDS50393.1
      UniProtKB/TrEMBL
      G5E851
      Related
      ENSMUSP00000025635.7, ENSMUST00000025635.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      11074178..11108253 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030251070.1 → XP_030106930.1  uncharacterized protein LOC69369 isoform X1

      UniProtKB/TrEMBL
      A0A9L6KEB7
      Related
      ENSMUSP00000159618.1, ENSMUST00000249236.1

    2. XM_006527323.4 → XP_006527386.1  uncharacterized protein LOC69369 isoform X2

      UniProtKB/TrEMBL
      A0A9L6KDG8
      Related
      ENSMUSP00000159615.1, ENSMUST00000249233.1

    3. XM_006527325.4 → XP_006527388.1  uncharacterized protein LOC69369 isoform X4

      UniProtKB/TrEMBL
      A0A9L6KDU6
      Related
      ENSMUSP00000159612.1, ENSMUST00000249230.1

    4. XM_011247334.1 → XP_011245636.1  uncharacterized protein LOC69369 isoform X3

      UniProtKB/TrEMBL
      A0A9L6KDU6
    Nucleotide Protein Strain
    Heading Accession and Version

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