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    FDP41_003841 uncharacterized protein [ Naegleria fowleri ]

    Gene ID: 68111059, updated on 17-May-2024

    Summary

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    Gene symbol
    FDP41_003841
    Gene description
    uncharacterized protein
    Locus tag
    FDP41_003841
    See related
    AmoebaDB:FDP41_003841; VEuPathDB:FDP41_003841
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Naegleria fowleri (strain: ATCC 30894, nat-host: Homo sapiens, culture-collection: ATCC:30894)
    Lineage
    Eukaryota; Heterolobosea; Tetramitia; Eutetramitia; Vahlkampfiidae; Naegleria
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    Genomic context

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    See FDP41_003841 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_025407967.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025407967.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nanopore sequencing improves the draft genome of the human pathogenic amoeba Naegleria fowleri. Liechti N, et al. Sci Rep, 2019 Nov 5. PMID 31690847, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in error-prone translesion synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of zeta DNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_025407967.1 Reference assembly

      Range
      410324..416398 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044707190.1 → XP_044561901.1  uncharacterized protein FDP41_003841 [Naegleria fowleri]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6A5BT78
      Conserved Domains (5) summary
      cd05534
      Location:1395 → 1872
      POLBc_zeta; DNA polymerase type-B zeta subfamily catalytic domain. DNA polymerase (Pol) zeta is a member of the eukaryotic B-family of DNA polymerases and distantly related to DNA Pol delta. Pol zeta plays a major role in translesion replication and the production ...
      smart00439
      Location:558 → 688
      BAH; Bromo adjacent homology domain
      smart00486
      Location:1124 → 1636
      POLBc; DNA polymerase type-B family
      PTZ00166
      Location:1 → 280
      PTZ00166; DNA polymerase delta catalytic subunit; Provisional
      pfam14260
      Location:1912 → 2006
      zf-C4pol; C4-type zinc-finger of DNA polymerase delta
    Nucleotide Protein
    Heading Accession and Version

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