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    Sira Sid-1-related A [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 663709, updated on 12-Apr-2024

    Summary

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    Gene symbol
    Sira
    Gene description
    Sid-1-related A
    Locus tag
    TcasGA2_TC011760
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Also known as
    sid-1
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    Genomic context

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    See Sira in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 2 NC_087395.1 (24377918..24386409, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG9 NC_007424.3 (13866712..13875203, complement)

    Chromosome 2 - NC_087395.1Genomic Context describing neighboring genes Neighboring gene mitofilin Neighboring gene mitochondrial ribosomal protein L35 Neighboring gene uncharacterized LOC103314327 Neighboring gene uncharacterized LOC135265377 Neighboring gene uncharacterized LOC135265468 Neighboring gene Chitinase 10 Neighboring gene ubiquitin thioesterase trabid

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Exploring systemic RNA interference in insects: a genome-wide survey for RNAi genes in Tribolium. Tomoyasu Y, et al. Genome Biol, 2008 Jan 17. PMID 18201385, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Sid-1-related A
    Names
    AUGUSTUS-3.0.2_11760
    GLEAN_11760
    systemic RNA interference defective protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105542.1 → NP_001099012.1  Sid-1-related A precursor

      See identical proteins and their annotated locations for NP_001099012.1

      Status: PROVISIONAL

      Source sequence(s)
      EF688527
      UniProtKB/TrEMBL
      A7YFV8, D6WZW1
      Conserved Domains (1) summary
      pfam13965
      Location:179 → 757
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087395.1 Reference icTriCast1.1 Primary Assembly

      Range
      24377918..24386409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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