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    LOC6532349 unconventional myosin IC [ Drosophila yakuba ]

    Gene ID: 6532349, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6532349
    Gene description
    unconventional myosin IC
    Locus tag
    Dyak_GE21145
    See related
    EnsemblRapid:LOC6532349
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila yakuba
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GE21145; GE21145-PB; GE21145-PC; GE21145-PD
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6532349 in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 3L NC_052529.2 (1329252..1340301)
    101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 3L NC_052529.1 (1329255..1340280)

    Chromosome 3L - NC_052529.2Genomic Context describing neighboring genes Neighboring gene RNA polymerase-associated protein Ctr9 Neighboring gene lipid droplet-associated hydrolase Neighboring gene HECT and RLD domain containing E3 ubiquitin ligase 4 Neighboring gene leukocyte receptor cluster member 8 homolog Neighboring gene NADH dehydrogenase (ubiquinone) acyl carrier protein Neighboring gene mitotic spindle density 1 Neighboring gene mitotic spindle density 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microfilament motor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle transport along actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microvillus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of myosin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    unconventional myosin IC
    Names
    Dyak\GE21145
    Dyak\GE21145-PB
    Dyak\GE21145-PC
    Dyak\GE21145-PD
    dyak_GLEANR_4930

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Genomic

    1. NC_052529.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

      Range
      1329252..1340301
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015193805.3 → XP_015049291.1  unconventional myosin IC isoform X3

      UniProtKB/TrEMBL
      A0A0R1DZQ6
      Related
      XP_015049291.1, XM_015193805.3
      Conserved Domains (3) summary
      smart00242
      Location:6 → 694
      MYSc; Myosin. Large ATPases
      cd01378
      Location:26 → 681
      MYSc_Myo1; class I myosin, motor domain
      pfam06017
      Location:837 → 1009
      Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

    2. XM_015193804.3 → XP_015049290.1  unconventional myosin IC isoform X3

      UniProtKB/TrEMBL
      A0A0R1DZQ6
      Related
      XP_015049290.1, XM_015193804.3
      Conserved Domains (3) summary
      smart00242
      Location:6 → 694
      MYSc; Myosin. Large ATPases
      cd01378
      Location:26 → 681
      MYSc_Myo1; class I myosin, motor domain
      pfam06017
      Location:837 → 1009
      Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

    3. XM_039374072.2 → XP_039230006.1  unconventional myosin IC isoform X1

      Related
      XP_039230006.1, XM_039374072.2
      Conserved Domains (2) summary
      cd01378
      Location:52 → 707
      MYSc_Myo1; class I myosin, motor domain
      pfam06017
      Location:863 → 1049
      Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

    4. XM_002093073.4 → XP_002093109.2  unconventional myosin IC isoform X2

      UniProtKB/TrEMBL
      B4PD73
      Related
      XP_002093109.2, XM_002093073.4
      Conserved Domains (3) summary
      smart00242
      Location:15 → 703
      MYSc; Myosin. Large ATPases
      cd01378
      Location:35 → 690
      MYSc_Myo1; class I myosin, motor domain
      pfam06017
      Location:846 → 1018
      Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding
    Nucleotide Protein Strain
    Heading Accession and Version

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