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    UHO2_04931 putative ATP dependent RNA helicase [ Ustilago hordei ]

    Gene ID: 64865354, updated on 30-Nov-2023

    Summary

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    Gene symbol
    UHO2_04931
    Gene description
    putative ATP dependent RNA helicase
    Locus tag
    UHO2_04931
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ustilago hordei (strain: Uho2)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago
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    Genomic context

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    See UHO2_04931 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_024545272.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene related to PDS5 - precocious dissociation of sister chromatids

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024545272.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative ATP dependent RNA helicase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_024545272.1 Reference assembly

      Range
      335902..342561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041557462.1 → XP_041413396.1  putative ATP dependent RNA helicase [Ustilago hordei]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      I2FZ06
      Conserved Domains (5) summary
      PRK01172
      Location:1390 → 1786
      PRK01172; ATP-dependent DNA helicase
      COG1204
      Location:489 → 1290
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      cd18021
      Location:1370 → 1561
      DEXHc_Brr2_2; C-terminal D[D/E]X[H/Q]-box helicase domain of spliceosomal Brr2 RNA helicase
      pfam02889
      Location:1870 → 2188
      Sec63; Sec63 Brl domain
      pfam18149
      Location:295 → 402
      Helicase_PWI; N-terminal helicase PWI domain
    Nucleotide Protein
    Heading Accession and Version