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    Zfp872 zinc finger protein 872 [ Mus musculus (house mouse) ]

    Gene ID: 619310, updated on 27-Nov-2024

    Summary

    Official Symbol
    Zfp872provided by MGI
    Official Full Name
    zinc finger protein 872provided by MGI
    Primary source
    MGI:MGI:3588272
    See related
    Ensembl:ENSMUSG00000074472 AllianceGenome:MGI:3588272
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9530015I07Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF709 (zinc finger protein 709). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Zfp872 in Genome Data Viewer
    Location:
    9 A3; 9 8.57 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (22099462..22113419)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (22188166..22202123)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 867 pseudogene Neighboring gene ribosomal protein L15, pseudogene 3 Neighboring gene STARR-seq mESC enhancer starr_23538 Neighboring gene RIKEN cDNA 1810064F22 gene Neighboring gene zinc finger protein 791 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033813.4NP_001028985.1  zinc finger protein 564

      See identical proteins and their annotated locations for NP_001028985.1

      Status: PROVISIONAL

      Source sequence(s)
      AC159308
      Consensus CDS
      CCDS57663.1
      UniProtKB/TrEMBL
      Q3UVL3
      Related
      ENSMUSP00000136074.2, ENSMUST00000178901.8
      Conserved Domains (5) summary
      smart00349
      Location:444
      KRAB; krueppel associated box
      COG5048
      Location:164449
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:443
      KRAB; KRAB box
      pfam13465
      Location:184205
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      22099462..22113419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)