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    dapF diaminopimelate epimerase [ Pseudomonas amygdali pv. tabaci str. ATCC 11528 ]

    Gene ID: 61867495, updated on 13-Dec-2024

    Summary

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    Gene symbol
    dapF
    Gene description
    diaminopimelate epimerase
    Locus tag
    PSYTB_RS00500
    Gene type
    protein coding
    Organism
    Pseudomonas amygdali pv. tabaci str. ATCC 11528 (strain: ATCC 11528, pathovar: tabaci, culture-collection: ATCC:11528)
    Lineage
    Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas amygdali
    Old locus tag
    PSYTB_00500
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    Genomic context

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    NZ_CP042804.1Genomic Context describing neighboring genes Neighboring gene LPS translocon maturation chaperone LptM Neighboring gene diaminopimelate decarboxylase Neighboring gene DUF484 family protein Neighboring gene tyrosine recombinase XerC Neighboring gene HAD family hydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP042804.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of Mycobacterium tuberculosis diaminopimelic acid epimerase: paired cysteine residues are crucial for racemization. Usha V, et al. FEMS Microbiol Lett, 2008 Mar. PMID 18269631
    2. Dimerization of bacterial diaminopimelate epimerase is essential for catalysis. Hor L, et al. J Biol Chem, 2013 Mar 29. PMID 23426375, Free PMC Article
    3. Chemical mechanism of Haemophilus influenzae diaminopimelate epimerase. Koo CW, et al. Biochemistry, 1999 Apr 6. PMID 10194362

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    diaminopimelate epimerase
    WP_004659606.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP042804.1 Reference assembly

      Range
      98516..99346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_004659606.1 MULTISPECIES: diaminopimelate epimerase [Pseudomonas]

      See identical proteins and their annotated locations for WP_004659606.1

      UniProtKB/Swiss-Prot
      Q48C02
      UniProtKB/TrEMBL
      A0A0N0G5G6, A0A0N0GSQ6, A0A0P9PHH2, A0A0P9QSC8, A0A0P9S628, A0A0P9UGA1, A0A0P9VHN3, A0A0P9VV66, A0A2K4X290, A0A3M5G8G0, A0A3M5HTN2, A0A3M6AY49, A0A7Z6Y332, A0A9X0H205, A0AAD0PV27, A0AAQ0MZW2, A0AAX1VKW5, E7PGF3
      Conserved Domains (1) summary
      PRK00450
      Location:1 → 276
      dapF; diaminopimelate epimerase; Provisional
    Nucleotide Protein
    Heading Accession and Version