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    HMPREF1534_RS05020 sigma-54-dependent transcriptional regulator [ Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 ]

    Gene ID: 60061190, updated on 9-Jan-2025

    Summary

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    Gene symbol
    HMPREF1534_RS05020
    Gene description
    sigma-54-dependent transcriptional regulator
    Locus tag
    HMPREF1534_RS05020
    Gene type
    protein coding
    Organism
    Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 (strain: DSM 17679, type-material: type strain of Bacteroides massiliensis)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
    Old locus tag
    HMPREF1534_02924
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    Genomic context

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    NZ_KB905473.1Genomic Context describing neighboring genes Neighboring gene DUF3945 domain-containing protein Neighboring gene hypothetical protein Neighboring gene hybrid sensor histidine kinase/response regulator Neighboring gene TetR/AcrR family transcriptional regulator Neighboring gene StlD/DarB family beta-ketosynthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_KB905473.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Domain architectures of sigma54-dependent transcriptional activators. Studholme DJ, et al. J Bacteriol, 2003 Mar. PMID 12618438, Free PMC Article
    2. Diversity of structure and function of response regulator output domains. Galperin MY. Curr Opin Microbiol, 2010 Apr. PMID 20226724, Free PMC Article
    3. Signal sensing by sigma 54-dependent regulators: derepression as a control mechanism. Shingler V. Mol Microbiol, 1996 Feb. PMID 8830233
    4. Two-component signal transduction. Stock AM, et al. Annu Rev Biochem, 2000. PMID 10966457

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    sigma-54-dependent transcriptional regulator

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_KB905473.1 Reference assembly

      Range
      284220..285539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005942696.1 MULTISPECIES: sigma-54-dependent transcriptional regulator [Bacteroidales]

      See identical proteins and their annotated locations for WP_005942696.1

      UniProtKB/TrEMBL
      A0A374Q325, A0A3A5WLR5, A0A3E4QV08, U6REC4
      Conserved Domains (1) summary
      COG2204
      Location:1 → 439
      AtoC; DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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