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    ybeY rRNA maturation RNase YbeY [ Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 ]

    Gene ID: 60060279, updated on 9-Jan-2025

    Summary

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    Gene symbol
    ybeY
    Gene description
    rRNA maturation RNase YbeY
    Locus tag
    HMPREF1534_RS00745
    Gene type
    protein coding
    Organism
    Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 (strain: DSM 17679, type-material: type strain of Bacteroides massiliensis)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
    Old locus tag
    HMPREF1534_03852
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    Genomic context

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    NZ_KB905475.1Genomic Context describing neighboring genes Neighboring gene adenine phosphoribosyltransferase Neighboring gene tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG Neighboring gene nucleoside recognition domain-containing protein Neighboring gene murein L,D-transpeptidase catalytic domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_KB905475.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The RNase YbeY Is Vital for Ribosome Maturation, Stress Resistance, and Virulence of the Natural Genetic Engineer Agrobacterium tumefaciens. Möller P, et al. J Bacteriol, 2019 Jun 1. PMID 30885931, Free PMC Article
    2. The ybeY protein from Escherichia coli is a metalloprotein. Zhan C, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2005 Nov 1. PMID 16511207, Free PMC Article
    3. Conserved bacterial RNase YbeY plays key roles in 70S ribosome quality control and 16S rRNA maturation. Jacob AI, et al. Mol Cell, 2013 Feb 7. PMID 23273979, Free PMC Article
    4. Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing. Davies BW, et al. Mol Microbiol, 2010 Oct. PMID 20807199, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    rRNA maturation RNase YbeY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_KB905475.1 Reference assembly

      Range
      236772..237188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005945285.1 MULTISPECIES: rRNA maturation RNase YbeY [Phocaeicola]

      See identical proteins and their annotated locations for WP_005945285.1

      UniProtKB/TrEMBL
      U6R830
      Conserved Domains (1) summary
      TIGR00043
      Location:35 → 136
      TIGR00043; rRNA maturation RNase YbeY
    Nucleotide Protein
    Heading Accession and Version

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