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    rbms1a RNA binding motif, single stranded interacting protein 1a [ Danio rerio (zebrafish) ]

    Gene ID: 564994, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rbms1aprovided by ZNC
    Official Full Name
    RNA binding motif, single stranded interacting protein 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4967
    See related
    Ensembl:ENSDARG00000074023 AllianceGenome:ZFIN:ZDB-GENE-030131-4967
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fe16a10; wu:fe16a10
    Summary
    Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Orthologous to human RBMS1 (RNA binding motif single stranded interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rbms1a in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (10909174..10960406)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (10925460..10976672)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene integrin, beta 6 Neighboring gene phospholipase A2 receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of Oncorhynchus mykiss 5-hydroxyisourate hydrolase/transthyretin superfamily: evolutionary and functional analyses. Kasai K, et al. Gene, 2013 Dec 1. PMID 23994290
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA 3'-UTR binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables poly(A) binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables poly(U) RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding motif, single-stranded-interacting protein 1
    Names
    rbms1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      10909174..10960406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_688303.10 → XP_693395.3  RNA-binding motif, single-stranded-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8N7T691
      Conserved Domains (1) summary
      cl17169
      Location:50 → 135
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_005155722.5 → XP_005155779.1  RNA-binding motif, single-stranded-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B275, E7FAG7
      Related
      ENSDARP00000064859.5, ENSDART00000064860.7
      Conserved Domains (1) summary
      cl17169
      Location:50 → 135
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_005155723.5 → XP_005155780.1  RNA-binding motif, single-stranded-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B2N5
      Conserved Domains (1) summary
      cl17169
      Location:50 → 135
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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