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    si:ch211-66i15.4 si:ch211-66i15.4 [ Danio rerio (zebrafish) ]

    Gene ID: 560315, updated on 9-Dec-2024

    Summary

    Official Symbol
    si:ch211-66i15.4provided by ZNC
    Official Full Name
    si:ch211-66i15.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090313-121
    See related
    Ensembl:ENSDARG00000097071 AllianceGenome:ZFIN:ZDB-GENE-090313-121
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in regulation of cell projection organization. Orthologous to human CIMAP3 (ciliary microtubule associated protein 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See si:ch211-66i15.4 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (32401135..32404187, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (32482301..32498552, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 5 Neighboring gene ankyrin repeat domain 52a Neighboring gene si:ch211-66i15.5 Neighboring gene TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor Neighboring gene transcription initiation factor TFIID subunit 8-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC560315

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386494.1NP_001373423.1  uncharacterized protein LOC560315

      Status: VALIDATED

      Source sequence(s)
      BX957355
      UniProtKB/TrEMBL
      A0A8M9Q836
      Related
      ENSDARP00000128738.1, ENSDART00000156387.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      32401135..32404187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395161.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      366986..370038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)