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    zgc:152753 zgc:152753 [ Danio rerio (zebrafish) ]

    Gene ID: 553486, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:152753provided by ZNC
    Official Full Name
    zgc:152753provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060818-8
    See related
    Ensembl:ENSDARG00000056443 AllianceGenome:ZFIN:ZDB-GENE-060818-8
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable GTP binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See zgc:152753 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (1934498..1938588, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (2455377..2459471, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene GTPase IMAP family member 7-like Neighboring gene zgc:101806 Neighboring gene zgc:165583 Neighboring gene si:ch211-254c8.3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC152753

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC553486

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044323.2NP_001037788.1  uncharacterized protein LOC553486

      See identical proteins and their annotated locations for NP_001037788.1

      Status: PREDICTED

      Source sequence(s)
      BC121751
      UniProtKB/TrEMBL
      Q0V951
      Related
      ENSDARP00000017856.7, ENSDART00000013001.8
      Conserved Domains (1) summary
      cd01852
      Location:31225
      AIG1; AvrRpt2-Induced Gene 1 (AIG1)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      1934498..1938588 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017354240.3XP_017209729.1  uncharacterized protein LOC553486 isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z535