lsr lipolysis stimulated lipoprotein receptor [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lsrprovided by ZNC
Official Full Name: lipolysis stimulated lipoprotein receptorprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050913-73
See related: Ensembl:ENSDARG00000099291 AllianceGenome:ZFIN:ZDB-GENE-050913-73
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: lsrl; Lisch7; zgc:114089
Summary: Acts upstream of or within endoderm development and pancreas development. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in plasma membrane and tricellular tight junction. Is expressed in several structures, including EVL; Kupffer's vesicle; digestive system; pronephros; and sensory system. Orthologous to human LSR (lipolysis stimulated lipoprotein receptor). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 15

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (33939065..33964911, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (34081079..34106950, complement)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc35d12.x1 (e-PCR)
- UniSTS:193630

fj03d12.x1 (e-PCR)
- UniSTS:198321

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within endoderm development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in establishment of blood-brain barrier	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within pancreas development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in tricellular tight junction assembly	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in anchoring junction	IEA Inferred from Electronic Annotation more info
located_in bicellular tight junction	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in tricellular tight junction	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: lipolysis-stimulated lipoprotein receptor

Names: lsr like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.