U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC5521737 protein lin-52 homolog [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5521737, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC5521737
    Gene description
    protein lin-52 homolog
    Locus tag
    NEMVEDRAFT_v1g238117
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC5521737 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (15232789..15235441)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834411.1 (2393596..2396235)

    Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene T-complex protein 1 subunit epsilon Neighboring gene methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial Neighboring gene signal recognition particle 54 kDa protein Neighboring gene spectrin beta chain, non-erythrocytic 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DRM complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein lin-52 homolog
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064035.1 Reference jaNemVect1.1

      Range
      15232789..15235441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001641461.3 → XP_001641511.1  protein lin-52 homolog

      See identical proteins and their annotated locations for XP_001641511.1

      UniProtKB/TrEMBL
      A7RGP2
      Conserved Domains (1) summary
      pfam10044
      Location:15 → 110
      LIN52; Retinal tissue protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials