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    LOC5518191 signal recognition particle receptor subunit alpha homolog [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5518191, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5518191
    Gene description
    signal recognition particle receptor subunit alpha homolog
    Locus tag
    NEMVEDRAFT_v1g90575
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5518191 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 9 NC_064042.1 (7131544..7139225)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834390.1 (715349..722410)

    Chromosome 9 - NC_064042.1Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphate exchanger SLC37A2 Neighboring gene uncharacterized LOC116601917 Neighboring gene ankyrin repeat, PH and SEC7 domain containing protein secG-like Neighboring gene hemicentin-1 Neighboring gene uncharacterized LOC116601860 Neighboring gene hemicentin-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signal recognition particle binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of signal recognition particle receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    signal recognition particle receptor subunit alpha homolog
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064042.1 Reference jaNemVect1.1

      Range
      7131544..7139225
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032362659.2 → XP_032218550.1  signal recognition particle receptor subunit alpha homolog

      UniProtKB/TrEMBL
      A7RR36
      Conserved Domains (3) summary
      cd17876
      Location:441 → 657
      SRalpha_C; C-terminal domain of signal recognition particle receptor alpha subunit
      pfam02881
      Location:339 → 411
      SRP54_N; SRP54-type protein, helical bundle domain
      pfam04086
      Location:46 → 310
      SRP-alpha_N; Signal recognition particle, alpha subunit, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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