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    LOC5514303 spectrin beta chain, non-erythrocytic 1 [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5514303, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC5514303
    Gene description
    spectrin beta chain, non-erythrocytic 1
    Locus tag
    NEMVEDRAFT_v1g165235
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5514303 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    59
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (8132466..8161470, complement)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834356.1 (171385..201859)

    Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene monocarboxylate transporter 10 Neighboring gene serine/threonine-protein kinase DCLK3 Neighboring gene uncharacterized LOC5514291 Neighboring gene uncharacterized LOC116619299 Neighboring gene V-type proton ATPase 116 kDa subunit a 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cortical actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spectrin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spectrin beta chain; spectrin beta chain, non-erythrocytic 1
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064035.1 Reference jaNemVect1.1

      Range
      8132466..8161470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032383958.2 → XP_032239849.2  spectrin beta chain isoform X2

      UniProtKB/TrEMBL
      A7S1C0

    2. XM_032383957.2 → XP_032239848.2  spectrin beta chain isoform X1

      UniProtKB/TrEMBL
      A7S1C0

    3. XM_032383959.2 → XP_032239850.2  spectrin beta chain, non-erythrocytic 1 isoform X3

      UniProtKB/TrEMBL
      A7S1C0

    4. XM_032383962.2 → XP_032239853.2  spectrin beta chain, non-erythrocytic 1 isoform X7

      UniProtKB/TrEMBL
      A7S1C0

    5. XM_048723357.1 → XP_048579314.1  spectrin beta chain, non-erythrocytic 1 isoform X6

      UniProtKB/TrEMBL
      A7S1C0

    6. XM_032383961.2 → XP_032239852.2  spectrin beta chain, non-erythrocytic 1 isoform X5

      UniProtKB/TrEMBL
      A7S1C0

    7. XM_048723356.1 → XP_048579313.1  spectrin beta chain, non-erythrocytic 1 isoform X4

      UniProtKB/TrEMBL
      A7S1C0
    Nucleotide Protein
    Heading Accession and Version

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