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    Gm5784 predicted gene 5784 [ Mus musculus (house mouse) ]

    Gene ID: 544848, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm5784provided by MGI
    Official Full Name
    predicted gene 5784provided by MGI
    Primary source
    MGI:MGI:3647969
    See related
    AllianceGenome:MGI:3647969
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm29737; EG544848
    Expression
    Ubiquitous expression in adrenal adult (RPKM 1.2), CNS E18 (RPKM 1.2) and 24 other tissues See more
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    Genomic context

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    See Gm5784 in Genome Data Viewer
    Location:
    12; 12 A1.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (19437582..19485163)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (19387643..19435162)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_31694 Neighboring gene predicted gene 5953 Neighboring gene hippocalcin-like 1 pseudogene Neighboring gene predicted gene 3973 Neighboring gene STARR-seq mESC enhancer starr_31695 Neighboring gene predicted gene 9257 Neighboring gene STARR-seq mESC enhancer starr_31696

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution. Yang P, et al. Trends Genet, 2017 Nov. PMID 28935117, Free PMC Article
    2. KRAB zinc finger proteins. Ecco G, et al. Development, 2017 Aug 1. PMID 28765213, Free PMC Article
    3. Evolution of KRAB-containing zinc finger proteins and their roles in species evolution. Wang J, et al. Yi Chuan, 2016 Nov 20. PMID 27867147
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC544848

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001384145.1 → NP_001371074.1  uncharacterized protein LOC544848 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC124739
      Conserved Domains (3) summary
      COG5048
      Location:198 → 603
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:342 → 362
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:45 → 85
      KRAB; KRAB box

    2. NM_001384146.1 → NP_001371075.1  uncharacterized protein LOC544848 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC124739
      Conserved Domains (1) summary
      pfam01352
      Location:45 → 85
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      19437582..19485163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157531.1 → XP_036013424.1  uncharacterized protein LOC544848 isoform X2

      UniProtKB/TrEMBL
      Q9CYR1
      Conserved Domains (1) summary
      pfam01352
      Location:45 → 85
      KRAB; KRAB box

    2. XM_035096944.2 → XP_034952835.1  uncharacterized protein LOC544848 isoform X1

      Conserved Domains (1) summary
      pfam01352
      Location:45 → 85
      KRAB; KRAB box

    3. XM_036157532.1 → XP_036013425.1  uncharacterized protein LOC544848 isoform X3

    4. XM_036157533.1 → XP_036013426.1  uncharacterized protein LOC544848 isoform X4

    5. XM_036157534.1 → XP_036013427.1  uncharacterized protein LOC544848 isoform X5

    6. XM_036157536.1 → XP_036013429.1  uncharacterized protein LOC544848 isoform X7

    7. XM_036157535.1 → XP_036013428.1  uncharacterized protein LOC544848 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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