U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    APS1 acid phosphatase [ Solanum lycopersicum (tomato) ]

    Gene ID: 544065, updated on 1-Nov-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    APS1
    Gene description
    acid phosphatase
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    APS-1; Aps-1(1)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See APS1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 6 NC_090805.1 (26096550..26101473)
    103 previous assembly SL3.0 (GCF_000188115.4) 6 NC_015443.3 (23780327..23785818)

    Chromosome 6 - NC_090805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109120528 Neighboring gene uncharacterized LOC101250414 Neighboring gene uncharacterized LOC101250123 Neighboring gene uncharacterized LOC101249274

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Partial sequence of acid phosphatase-1(1) gene (Aps-1(1)) linked to nematode resistance gene (Mi) of tomato. Tanaka H, et al. Biosci Biotechnol Biochem, 1992 Apr. PMID 1368210
    2. Acid phosphatase-1 from nematode resistant tomato : isolation and characterization of its gene. Williamson VM, et al. Plant Physiol, 1991 Sep. PMID 16668360, Free PMC Article
    3. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    acid phosphatase 1
    Names
    acid phosphatase-1(1)
    apase-1(1)
    NP_001234071.2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247142.2 → NP_001234071.2  acid phosphatase 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AK325212
      UniProtKB/Swiss-Prot
      P27061, Q41173
      UniProtKB/TrEMBL
      A0A3Q7GU13, Q53WT2
      Conserved Domains (1) summary
      TIGR01675
      Location:28 → 255
      plant-AP; plant acid phosphatase

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090805.1 Reference SLM_r2.1 Primary Assembly

      Range
      26096550..26101473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P27061.1 GenPept UniProtKB/Swiss-Prot:P27061

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases