U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PR-5 PR-5x [ Solanum lycopersicum (tomato) ]

    Gene ID: 543837, updated on 1-Nov-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PR-5
    Gene description
    PR-5x
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PR-5 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 8 NC_090807.1 (66014488..66015385)
    103 previous assembly SL3.0 (GCF_000188115.4) 8 NC_015445.3 (63975625..63976522)

    Chromosome 8 - NC_090807.1Genomic Context describing neighboring genes Neighboring gene thaumatin-like protein Neighboring gene osmotin-like protein OSML13 Neighboring gene uncharacterized LOC101265850 Neighboring gene proteinase inhibitor I

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato. Rep M, et al. Plant Physiol, 2002 Oct. PMID 12376655, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    osmotin-like protein PR-5x
    Names
    22 kDa pathogenesis-related protein
    Osmotin-like protein PR-5x
    Probable endo-beta-1,3-D-glucanase PR-5x
    pathogenesis-related protein PR-5 of xylem sap
    NP_001234161.2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247232.1 → NP_001234161.2  osmotin-like protein PR-5x precursor

      Status: VALIDATED

      Source sequence(s)
      AY093595
      UniProtKB/Swiss-Prot
      A0A291EWT8, A0A3Q7HTH3, Q01591, Q8LPU1
      Conserved Domains (1) summary
      cl02511
      Location:28 → 230
      GH64-TLP-SF; glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090807.1 Reference SLM_r2.1 Primary Assembly

      Range
      66014488..66015385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LPU1.2 GenPept UniProtKB/Swiss-Prot:Q8LPU1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases