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    M421DRAFT_159554 PLU-1-domain-containing protein [ Didymella exigua CBS 183.55 ]

    Gene ID: 54345305, updated on 14-Dec-2023

    Summary

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    Gene symbol
    M421DRAFT_159554
    Gene description
    PLU-1-domain-containing protein
    Locus tag
    M421DRAFT_159554
    Gene type
    protein coding
    RNA name
    PLU-1-domain-containing protein
    RefSeq status
    PROVISIONAL
    Organism
    Didymella exigua CBS 183.55 (strain: CBS 183.55, culture-collection: CBS:183.55, type-material: culture from neotype of Didymella exigua)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Didymellaceae; Didymella
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    Genomic context

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    See M421DRAFT_159554 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    4

    NW_022984788.1Genomic Context describing neighboring genes Neighboring gene TOM13-domain-containing protein Neighboring gene mitochondrial export translocase Oxa1 Neighboring gene hypothetical protein Neighboring gene structure-specific endonuclease subunit SLX1 Neighboring gene thymidylate kinase Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022984788.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PLU-1-domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_022984788.1 Reference assembly

      Range
      617350..623204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033587659.1 → XP_033448635.1  PLU-1-domain-containing protein [Didymella exigua CBS 183.55]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6A5RLP8
      Conserved Domains (8) summary
      smart00545
      Location:90 → 131
      JmjN; Small domain found in the jumonji family of transcription factors
      smart01014
      Location:157 → 245
      ARID; ARID/BRIGHT DNA binding domain
      cd15518
      Location:1345 → 1389
      PHD_Ecm5p_Lid2p_like; PHD finger found in Saccharomyces cerevisiae extracellular matrix protein 5 (Ecm5p), Schizosaccharomyces pombe Lid2 complex component Lid2p, and similar proteins
      cd15543
      Location:472 → 516
      PHD_RSF1; PHD finger found in Remodeling and spacing factor 1 (Rsf-1)
      pfam02373
      Location:644 → 760
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:872 → 931
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:947 → 1294
      PLU-1; PLU-1-like protein
      cl02608
      Location:493 → 579
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    Nucleotide Protein
    Heading Accession and Version

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