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    LBRM_22_0960 putative small nuclear ribonucleoprotein [ Leishmania braziliensis MHOM/BR/75/M2904 ]

    Gene ID: 5415581, updated on 30-Oct-2024

    Summary

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    Gene symbol
    LBRM_22_0960
    Gene description
    putative small nuclear ribonucleoprotein
    Locus tag
    LBRM_22_0960
    Gene type
    protein coding
    RNA name
    putative small nuclear ribonucleoprotein
    RefSeq status
    PROVISIONAL
    Organism
    Leishmania braziliensis MHOM/BR/75/M2904 (strain: MHOM/BR/75/M2904)
    Lineage
    Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania braziliensis species complex
    Orthologs
    Leishmania major all
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    Genomic context

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    See LBRM_22_0960 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    1
    Sequence:
    Chromosome: 22; NC_009314.2 (394935..395246)

    Chromosome 22 - NC_009314.2Genomic Context describing neighboring genes Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009314.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Peacock CS, et al. Nat Genet, 2007 Jul. PMID 17572675, Free PMC Article
    2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SMN-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pICln-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    putative small nuclear ribonucleoprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009314.2 Reference assembly

      Range
      394935..395246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001564965.1 → XP_001565015.1  putative small nuclear ribonucleoprotein [Leishmania braziliensis MHOM/BR/75/M2904]

      See identical proteins and their annotated locations for XP_001565015.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3P3Z6T5, A4HCC3
      Conserved Domains (1) summary
      cd01724
      Location:12 → 103
      Sm_D1; Sm protein D1
    Nucleotide Protein
    Heading Accession and Version

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