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    CNOT7 CCR4-NOT transcription complex subunit 7 [ Bos taurus (domestic cattle) ]

    Gene ID: 508055, updated on 14-Dec-2024

    Summary

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    Official Symbol
    CNOT7provided by VGNC
    Official Full Name
    CCR4-NOT transcription complex subunit 7provided by VGNC
    Primary source
    VGNC:VGNC:27522
    See related
    BGD:BT19115; Ensembl:ENSBTAG00000018036
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CNOT7 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 27 NC_037354.1 (19986516..20001559)

    Chromosome 27 - NC_037354.1Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 7 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene U6 snRNA-associated Sm-like protein LSm5 Neighboring gene VPS37A subunit of ESCRT-I Neighboring gene zinc finger DHHC-type palmitoyltransferase 2 Neighboring gene mitochondrial calcium uptake family member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037354.1 Chromosome 27 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128204

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of CCR4-NOT core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit 7
    Names
    CAF-1
    CCR4-associated factor 1
    NP_001029484.1
    XP_010818548.1
    XP_059738162.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034312.1 → NP_001029484.1  CCR4-NOT transcription complex subunit 7

      See identical proteins and their annotated locations for NP_001029484.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103000
      UniProtKB/Swiss-Prot
      Q3ZC01
      Related
      ENSBTAP00000024009.4, ENSBTAT00000024009.5
      Conserved Domains (1) summary
      cl23804
      Location:1 → 279
      CAF1; CAF1 family ribonuclease

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037354.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      19986516..20001559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882179.1 → XP_059738162.1  CCR4-NOT transcription complex subunit 7 isoform X1

      UniProtKB/Swiss-Prot
      Q3ZC01

    2. XM_010820246.3 → XP_010818548.1  CCR4-NOT transcription complex subunit 7 isoform X1

      See identical proteins and their annotated locations for XP_010818548.1

      UniProtKB/Swiss-Prot
      Q3ZC01
      Conserved Domains (1) summary
      cl23804
      Location:1 → 279
      CAF1; CAF1 family ribonuclease
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZC01.1 GenPept UniProtKB/Swiss-Prot:Q3ZC01

    Gene LinkOut

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