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    RAD51D RAD51 paralog D [ Canis lupus familiaris (dog) ]

    Gene ID: 491143, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RAD51Dprovided by VGNC
    Official Full Name
    RAD51 paralog Dprovided by VGNC
    Primary source
    VGNC:VGNC:45320
    See related
    Ensembl:ENSCAFG00845010579
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    RAD51L3
    Orthologs
    human mouse all
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    Genomic context

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    See RAD51D in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (39054355..39071978)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (37466391..37483936)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (38210969..38228575)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (37837927..37855463)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (38123438..38140985)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119873318 Neighboring gene fibronectin type III domain containing 8 Neighboring gene uncharacterized LOC111097423 Neighboring gene uncharacterized LOC119873319 Neighboring gene ring finger and FYVE like domain containing E3 ubiquitin protein ligase Neighboring gene DNA ligase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables four-way junction DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA strand invasion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein RAD51 homolog 4
    Names
    RAD51 homolog D
    RAD51-like 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      39054355..39071978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038677326.1 → XP_038533254.1  DNA repair protein RAD51 homolog 4 isoform X4

      Conserved Domains (2) summary
      PRK09302
      Location:61 → 114
      PRK09302; circadian clock protein KaiC; Reviewed
      cd19489
      Location:94 → 247
      Rad51D; RAD51D recombinase

    2. XM_038677325.1 → XP_038533253.1  DNA repair protein RAD51 homolog 4 isoform X3

      UniProtKB/TrEMBL
      A0A8P0PRC8, A0A8P0TSF5
      Conserved Domains (2) summary
      PLN03186
      Location:11 → 149
      PLN03186; DNA repair protein RAD51 homolog; Provisional
      cd19489
      Location:94 → 244
      Rad51D; RAD51D recombinase

    3. XM_038677324.1 → XP_038533252.1  DNA repair protein RAD51 homolog 4 isoform X2

      UniProtKB/TrEMBL
      A0A8P0TPH0, A0A8P0TSF5
      Conserved Domains (1) summary
      cd19489
      Location:94 → 266
      Rad51D; RAD51D recombinase

    4. XM_038677323.1 → XP_038533251.1  DNA repair protein RAD51 homolog 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KIZ9, A0A8I3NE17, A0A8P0T8Y5, A0A8P0TSF5
      Related
      ENSCAFP00845014608.1, ENSCAFT00845018713.1
      Conserved Domains (1) summary
      cd19489
      Location:94 → 298
      Rad51D; RAD51D recombinase

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      37837927..37855463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038486288.1 → XP_038342216.1  DNA repair protein RAD51 homolog 4 isoform X4

      Conserved Domains (2) summary
      PRK09302
      Location:61 → 114
      PRK09302; circadian clock protein KaiC; Reviewed
      cd19489
      Location:94 → 247
      Rad51D; RAD51D recombinase

    2. XM_038486287.1 → XP_038342215.1  DNA repair protein RAD51 homolog 4 isoform X3

      Conserved Domains (2) summary
      PLN03186
      Location:11 → 149
      PLN03186; DNA repair protein RAD51 homolog; Provisional
      cd19489
      Location:94 → 244
      Rad51D; RAD51D recombinase

    3. XM_038486286.1 → XP_038342214.1  DNA repair protein RAD51 homolog 4 isoform X2

      Conserved Domains (1) summary
      cd19489
      Location:94 → 266
      Rad51D; RAD51D recombinase

    4. XM_038486285.1 → XP_038342213.1  DNA repair protein RAD51 homolog 4 isoform X1

      Conserved Domains (1) summary
      cd19489
      Location:94 → 298
      Rad51D; RAD51D recombinase

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      38123438..38140985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038612080.1 → XP_038468008.1  DNA repair protein RAD51 homolog 4 isoform X4

      Conserved Domains (2) summary
      PRK09302
      Location:61 → 114
      PRK09302; circadian clock protein KaiC; Reviewed
      cd19489
      Location:94 → 247
      Rad51D; RAD51D recombinase

    2. XM_038612079.1 → XP_038468007.1  DNA repair protein RAD51 homolog 4 isoform X3

      Conserved Domains (2) summary
      PLN03186
      Location:11 → 149
      PLN03186; DNA repair protein RAD51 homolog; Provisional
      cd19489
      Location:94 → 244
      Rad51D; RAD51D recombinase

    3. XM_038612078.1 → XP_038468006.1  DNA repair protein RAD51 homolog 4 isoform X2

      Conserved Domains (1) summary
      cd19489
      Location:94 → 266
      Rad51D; RAD51D recombinase

    4. XM_038612077.1 → XP_038468005.1  DNA repair protein RAD51 homolog 4 isoform X1

      Conserved Domains (1) summary
      cd19489
      Location:94 → 298
      Rad51D; RAD51D recombinase

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      38210969..38228575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038548108.1 → XP_038404036.1  DNA repair protein RAD51 homolog 4 isoform X4

      Conserved Domains (2) summary
      PRK09302
      Location:61 → 114
      PRK09302; circadian clock protein KaiC; Reviewed
      cd19489
      Location:94 → 247
      Rad51D; RAD51D recombinase

    2. XM_038548107.1 → XP_038404035.1  DNA repair protein RAD51 homolog 4 isoform X3

      UniProtKB/TrEMBL
      A0A8P0PRC8, A0A8P0TSF5
      Conserved Domains (2) summary
      PLN03186
      Location:11 → 149
      PLN03186; DNA repair protein RAD51 homolog; Provisional
      cd19489
      Location:94 → 244
      Rad51D; RAD51D recombinase

    3. XM_038548106.1 → XP_038404034.1  DNA repair protein RAD51 homolog 4 isoform X2

      UniProtKB/TrEMBL
      A0A8P0TPH0, A0A8P0TSF5
      Conserved Domains (1) summary
      cd19489
      Location:94 → 266
      Rad51D; RAD51D recombinase

    4. XM_038548105.1 → XP_038404033.1  DNA repair protein RAD51 homolog 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KIZ9, A0A8I3NE17, A0A8P0T8Y5, A0A8P0TSF5
      Conserved Domains (1) summary
      cd19489
      Location:94 → 298
      Rad51D; RAD51D recombinase

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      37466391..37483936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022423307.2 → XP_022279015.1  DNA repair protein RAD51 homolog 4 isoform X4

      Conserved Domains (2) summary
      PRK09302
      Location:61 → 114
      PRK09302; circadian clock protein KaiC; Reviewed
      cd19489
      Location:94 → 247
      Rad51D; RAD51D recombinase

    2. XM_022423306.2 → XP_022279014.1  DNA repair protein RAD51 homolog 4 isoform X3

      UniProtKB/TrEMBL
      A0A8P0PRC8, A0A8P0TSF5
      Conserved Domains (2) summary
      PLN03186
      Location:11 → 149
      PLN03186; DNA repair protein RAD51 homolog; Provisional
      cd19489
      Location:94 → 244
      Rad51D; RAD51D recombinase

    3. XM_022423305.2 → XP_022279013.1  DNA repair protein RAD51 homolog 4 isoform X2

      UniProtKB/TrEMBL
      A0A8P0TPH0, A0A8P0TSF5
      Conserved Domains (1) summary
      cd19489
      Location:94 → 266
      Rad51D; RAD51D recombinase

    4. XM_548263.7 → XP_548263.2  DNA repair protein RAD51 homolog 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KIZ9, A0A8I3NE17, A0A8P0T8Y5, A0A8P0TSF5
      Conserved Domains (1) summary
      cd19489
      Location:94 → 298
      Rad51D; RAD51D recombinase
    Nucleotide Protein
    Heading Accession and Version

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