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    dpaA peptidoglycan meso-diaminopimelic acid protein amidase [ Citrobacter koseri ATCC BAA-895 ]

    Gene ID: 45136777, updated on 3-Dec-2024

    Summary

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    Gene symbol
    dpaA
    Gene description
    peptidoglycan meso-diaminopimelic acid protein amidase
    Locus tag
    CKO_RS12625
    Gene type
    protein coding
    Organism
    Citrobacter koseri ATCC BAA-895 (strain: ATCC BAA-895)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter
    Old locus tag
    CKO_02961
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    Genomic context

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    Sequence:
    NC_009792.1 (2743395..2744135)

    NC_009792.1Genomic Context describing neighboring genes Neighboring gene cytosol nonspecific dipeptidase Neighboring gene DNA polymerase IV Neighboring gene class II glutamine amidotransferase Neighboring gene D-sedoheptulose 7-phosphate isomerase Neighboring gene acyl-CoA dehydrogenase FadE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009792.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cleavage of Braun's lipoprotein Lpp from the bacterial peptidoglycan by a paralog of l,d-transpeptidases, LdtF. Bahadur R, et al. Proc Natl Acad Sci U S A, 2021 May 11. PMID 33941679, Free PMC Article
    2. DpaA Detaches Braun's Lipoprotein from Peptidoglycan. Winkle M, et al. mBio, 2021 May 4. PMID 33947763, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    peptidoglycan meso-diaminopimelic acid protein amidase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009792.1 Reference assembly

      Range
      2743395..2744135
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_012133778.1 MULTISPECIES: peptidoglycan meso-diaminopimelic acid protein amidase [Citrobacter]

      See identical proteins and their annotated locations for WP_012133778.1

      UniProtKB/TrEMBL
      A0A078LKJ7, A0AAW7EZ27, A8AKQ3
      Conserved Domains (1) summary
      COG3034
      Location:1 → 246
      YafK; Murein L,D-transpeptidase YafK [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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