dcaf11 DDB1 and CUL4 associated factor 11 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: dcaf11provided by Xenbase
Official Full Name: DDB1 and CUL4 associated factor 11provided by Xenbase
Primary source: Xenbase:XB-GENE-946322
See related: Ensembl:ENSXETG00000014610 AllianceGenome:Xenbase:XB-GENE-946322
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: wdr23
Summary: Predicted to act upstream of or within protein ubiquitination. Orthologous to human DCAF11 (DDB1 and CUL4 associated factor 11). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	1	NC_030677.2 (139460672..139479302, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	1	NC_030677.1 (127250845..127270455, complement)

Chromosome 1 - NC_030677.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of Cul4-RING E3 ubiquitin ligase complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: DDB1- and CUL4-associated factor 11

Names: WD repeat domain 23

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001005697.1 → NP_001005697.1 DDB1- and CUL4-associated factor 11

See identical proteins and their annotated locations for NP_001005697.1

Status: PROVISIONAL

Source sequence(s)

BC075264

UniProtKB/TrEMBL

A0A803KK14, F6SMV3, Q6DJB8

Related

ENSXETP00000031964.4, ENSXETT00000031964.5

Conserved Domains (2) summary

sd00039
Location:215 → 257

7WD40; WD40 repeat [structural motif]

cl29593
Location:214 → 505

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

139460672..139479302 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012959325.2 → XP_012814779.1 DDB1- and CUL4-associated factor 11 isoform X1

See identical proteins and their annotated locations for XP_012814779.1

UniProtKB/TrEMBL

A0A803KK14, F6SMV3, Q6DJB8

Conserved Domains (2) summary

sd00039
Location:215 → 257

7WD40; WD40 repeat [structural motif]

cl29593
Location:214 → 505

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_012959329.3 → XP_012814783.1 DDB1- and CUL4-associated factor 11 isoform X1

See identical proteins and their annotated locations for XP_012814783.1

UniProtKB/TrEMBL

A0A803KK14, F6SMV3, Q6DJB8

Conserved Domains (2) summary

sd00039
Location:215 → 257

7WD40; WD40 repeat [structural motif]

cl29593
Location:214 → 505

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_012959331.3 → XP_012814785.1 DDB1- and CUL4-associated factor 11 isoform X2

UniProtKB/TrEMBL

A0A6I8RCU2, A0A8J0S9X4

Related

ENSXETP00000082807.2, ENSXETT00000076827.2

Conserved Domains (3) summary

COG2319
Location:133 → 465

WD40; WD40 repeat [General function prediction only]

sd00039
Location:175 → 217

7WD40; WD40 repeat [structural motif]

cl02567
Location:174 → 465

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...