wdr46.L WD repeat domain 46 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: wdr46.L
Official Full Name: WD repeat domain 46 L homeolog
Primary source: Xenbase:XB-GENE-865861
Locus tag: XELAEV_18039126mg
See related: EnsemblRapid:ENSXLAG00005032124 AllianceGenome:Xenbase:XB-GENE-865861
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: Bing4; wdr46; bing4-a; wdr46-a; wdr46-b
Summary: Predicted to act upstream of or within maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Predicted to be part of 90S preribosome and small-subunit processome. Orthologous to human WDR46 (WD repeat domain 46). [provided by Alliance of Genome Resources, Dec 2024]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 8L

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8L	NC_054385.1 (63815840..63829072)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8L	NC_030738.1 (50632599..50645837)

Chromosome 8L - NC_054385.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Component	Evidence Code	Pubs
located_in nucleolus	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: WD repeat domain 46 L homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093647.1 → NP_001087116.1 WD repeat domain 46 L homeolog

See identical proteins and their annotated locations for NP_001087116.1

Status: PROVISIONAL

Source sequence(s)

BC078006

UniProtKB/TrEMBL

A0A974C737, Q6DCK7

Related

ENSXLAP00005096239.1, ENSXLAT00005098008.1

Conserved Domains (4) summary

smart01033
Location:412 → 490

BING4CT; BING4CT (NUC141) domain

COG2319
Location:180 → 442

WD40; WD40 repeat [General function prediction only]

sd00039
Location:179 → 213

7WD40; WD40 repeat [structural motif]

cl02567
Location:252 → 396

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...