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    LOC4324654 probable starch synthase 4, chloroplastic/amyloplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324654, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4324654
    Gene description
    probable starch synthase 4, chloroplastic/amyloplastic
    Locus tag
    OSNPB_010720600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SSIV-1
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    Genomic context

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    See LOC4324654 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30629387..30638385, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30032427..30041471, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene inorganic pyrophosphatase 1 Neighboring gene chlorophyll a-b binding protein 2, chloroplastic-like Neighboring gene probable serine acetyltransferase 1 Neighboring gene uncharacterized LOC9270472

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution and expression analysis of starch synthase III and IV in rice. Dian W, et al. J Exp Bot, 2005 Feb. PMID 15642712
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable starch synthase 4, chloroplastic/amyloplastic
    Names
    Os01g0720600
    P0690B02.8-1
    P0690B02.8-2
    P0690B02.8-3
    glycogen (starch) synthase-like
    soluble starch synthase IV-1
    starch synthase IVa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30629387..30638385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303467.1 → XP_066159564.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X4

      UniProtKB/TrEMBL
      D0TZV4, Q8L8G8

    2. XM_066303466.1 → XP_066159563.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X3

      UniProtKB/TrEMBL
      D0TZV4, Q8L8G8

    3. XM_015792791.3 → XP_015648277.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X2

      UniProtKB/TrEMBL
      D0TZV4, Q5JMA2, Q6UBQ7, Q8L8G8
      Conserved Domains (2) summary
      cd03791
      Location:478 → 961
      GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
      PLN02939
      Location:10 → 972
      PLN02939; transferase, transferring glycosyl groups

    4. XM_015792783.3 → XP_015648269.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0V7K3, D0TZV4, Q5JMA1, Q8L8G8
      Conserved Domains (1) summary
      PLN02939
      Location:10 → 975
      PLN02939; transferase, transferring glycosyl groups
    Nucleotide Protein
    Heading Accession and Version

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