COL6A6 collagen type VI alpha 6 chain [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: COL6A6provided by CGNC
Official Full Name: collagen type VI alpha 6 chainprovided by CGNC
Primary source: CGNC:53367
See related: Ensembl:ENSGALG00010018426
Gene type: protein coding
RefSeq status: MODEL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 36

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	2	NC_052533.1 (41452538..41498064)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	2	NC_052574.1 (41506285..41557509)

Chromosome 2 - NC_052533.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables serine-type endopeptidase inhibitor activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-6(VI) chain; LOW QUALITY PROTEIN: collagen alpha-6(VI) chain

Names: collagen, type VI, alpha 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

41452538..41498064

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040695999.2 → XP_040551933.2 LOW QUALITY PROTEIN: collagen alpha-6(VI) chain isoform X1

Related

ENSGALP00010026505.1, ENSGALT00010044525.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

41506285..41557509

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046911985.1 → XP_046767941.1 collagen alpha-6(VI) chain isoform X5
XM_040662833.2 → XP_040518767.1 collagen alpha-6(VI) chain isoform X6

Conserved Domains (6) summary

smart00131
Location:2486 → 2538

KU; BPTI/Kunitz family of serine protease inhibitors

smart00327
Location:1387 → 1570

VWA; von Willebrand factor (vWF) type A domain

PHA03169
Location:1636 → 1826

PHA03169; hypothetical protein; Provisional

cd01450
Location:1003 → 1158

vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

cd01472
Location:32 → 197

vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

cl00057
Location:428 → 594

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_046911986.1 → XP_046767942.1 collagen alpha-6(VI) chain isoform X5
XM_040662832.2 → XP_040518766.1 collagen alpha-6(VI) chain isoform X5

Conserved Domains (6) summary

smart00131
Location:2487 → 2539

KU; BPTI/Kunitz family of serine protease inhibitors

smart00327
Location:1388 → 1571

VWA; von Willebrand factor (vWF) type A domain

PHA03169
Location:1637 → 1827

PHA03169; hypothetical protein; Provisional

cd01450
Location:1004 → 1159

vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

cd01472
Location:33 → 198

vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

cl00057
Location:429 → 595

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_040662831.2 → XP_040518765.1 collagen alpha-6(VI) chain isoform X4

Conserved Domains (6) summary

smart00131
Location:2502 → 2554

KU; BPTI/Kunitz family of serine protease inhibitors

smart00327
Location:1404 → 1587

VWA; von Willebrand factor (vWF) type A domain

PHA03169
Location:1653 → 1843

PHA03169; hypothetical protein; Provisional

cd01450
Location:1020 → 1175

vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

cd01472
Location:49 → 214

vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

cl00057
Location:445 → 611

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_040662829.2 → XP_040518763.1 collagen alpha-6(VI) chain isoform X2

Conserved Domains (6) summary

smart00131
Location:2503 → 2555

KU; BPTI/Kunitz family of serine protease inhibitors

smart00327
Location:1404 → 1587

VWA; von Willebrand factor (vWF) type A domain

PHA03169
Location:1653 → 1843

PHA03169; hypothetical protein; Provisional

cd01450
Location:1020 → 1175

vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

cd01472
Location:49 → 214

vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

cl00057
Location:445 → 611

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_040662830.2 → XP_040518764.1 collagen alpha-6(VI) chain isoform X3

Conserved Domains (6) summary

smart00131
Location:2502 → 2554

KU; BPTI/Kunitz family of serine protease inhibitors

smart00327
Location:1403 → 1586

VWA; von Willebrand factor (vWF) type A domain

PHA03169
Location:1652 → 1842

PHA03169; hypothetical protein; Provisional

cd01450
Location:1019 → 1174

vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

cd01472
Location:48 → 213

vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...

cl00057
Location:444 → 610

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...