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    ITGB3BP integrin subunit beta 3 binding protein [ Gallus gallus (chicken) ]

    Gene ID: 424689, updated on 3-Dec-2024

    Summary

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    Symbol
    ITGB3BPprovided by CGNC
    Full Name
    integrin subunit beta 3 binding proteinprovided by CGNC
    Primary source
    CGNC:8355
    See related
    Ensembl:ENSGALG00010024277
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CENPR; NRIF3; CENP-R
    Orthologs
    human mouse all
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    Genomic context

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    See ITGB3BP in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (27497060..27521815, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (27510364..27535110, complement)

    Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene forkhead box D3 Neighboring gene ALG6, alpha-1,3-glucosyltransferase Neighboring gene EF-hand calcium binding domain 7 Neighboring gene phosphoglucomutase 1 Neighboring gene receptor tyrosine kinase like orphan receptor 1 Neighboring gene cache domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres. Okada M, et al. Nat Cell Biol, 2006 May. PMID 16622420
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The CENP-H-I complex may function, in part, as a marker directing CENP-A deposition to centromeres.[CENPA, CENPI]
      Title: The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in CENP-A containing chromatin assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    centromere protein R
    Names
    beta3-endonexin
    integrin beta 3 binding protein (beta3-endonexin)
    nuclear receptor-interacting factor 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044658.3 → NP_001038123.3  centromere protein R

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000239
      UniProtKB/Swiss-Prot
      Q1T763
      Related
      ENSGALP00010036154.1, ENSGALT00010059231.1

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      27497060..27521815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025152886.3 → XP_025008654.2  centromere protein R isoform X1

      UniProtKB/TrEMBL
      A0A8V1A4D6, A0A8V1A4E0
      Related
      ENSGALP00010036141.1, ENSGALT00010059214.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      27510364..27535110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046922861.1 → XP_046778817.1  centromere protein R isoform X1

      UniProtKB/TrEMBL
      A0A8V1A4D6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1T763.1 GenPept UniProtKB/Swiss-Prot:Q1T763

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.