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    vps26b VPS26, retromer complex component B [ Danio rerio (zebrafish) ]

    Gene ID: 406684, updated on 9-Dec-2024

    Summary

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    Official Symbol
    vps26bprovided by ZNC
    Official Full Name
    VPS26, retromer complex component Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2699
    See related
    Ensembl:ENSDARG00000015823 AllianceGenome:ZFIN:ZDB-GENE-040426-2699
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56297; wu:fb49d07; wu:fb50d06
    Summary
    Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26 retromer complex component B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See vps26b in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (19324702..19331078)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (19388955..19395346)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487741 Neighboring gene junctional adhesion molecule 3a Neighboring gene thymocyte nuclear protein 1 Neighboring gene acyl-CoA dehydrogenase family, member 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos. Lemeer S, et al. Mol Cell Proteomics, 2008 Nov. PMID 18550893
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of retromer complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 26B
    Names
    vacuolar protein sorting 26 homolog B
    vesicle protein sorting 26B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213375.1 → NP_998540.1  vacuolar protein sorting-associated protein 26B

      See identical proteins and their annotated locations for NP_998540.1

      Status: PROVISIONAL

      Source sequence(s)
      BC046056
      UniProtKB/Swiss-Prot
      Q7ZV03
      Related
      ENSDARP00000020396.5, ENSDART00000022015.6
      Conserved Domains (1) summary
      pfam03643
      Location:6 → 281
      Vps26; Vacuolar protein sorting-associated protein 26

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      19324702..19331078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005157511.5 → XP_005157568.1  vacuolar protein sorting-associated protein 26B isoform X1

      UniProtKB/TrEMBL
      A0A2R8Q1X8, A0A8M2B3N4
      Conserved Domains (1) summary
      pfam03643
      Location:17 → 292
      Vps26; Vacuolar protein sorting-associated protein 26

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394945.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      227600..234026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7ZV03.1 GenPept UniProtKB/Swiss-Prot:Q7ZV03

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