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    FABP6 fatty acid binding protein 6 [ Sus scrofa (pig) ]

    Gene ID: 397423, updated on 17-Aug-2024

    Summary

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    Official Symbol
    FABP6provided by VGNC
    Official Full Name
    fatty acid binding protein 6provided by VGNC
    Primary source
    VGNC:VGNC:87872
    See related
    Ensembl:ENSSSCG00000017037
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    GT; PIP; ILBP; ILLBP
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See FABP6 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (63297594..63303675, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (68721296..68727380, complement)

    Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102168193 Neighboring gene C1q and TNF related 2 Neighboring gene cyclin J like Neighboring gene uncharacterized LOC106506541 Neighboring gene PWWP domain containing 2A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. The complete amino acid sequence of porcine gastrotropin, an ileal protein which stimulates gastric acid and pepsinogen secretion. Walz DA, et al. J Biol Chem, 1988 Oct 5. PMID 3049572
    2. Gastrotropin: not an enterooxyntin but a member of a family of cytoplasmic hydrophobic ligand binding proteins. Gantz I, et al. J Biol Chem, 1989 Dec 5. PMID 2584215
    3. Solution structure of ileal lipid binding protein in complex with glycocholate. Lücke C, et al. Eur J Biochem, 2000 May. PMID 10806391
    4. Flexibility is a likely determinant of binding specificity in the case of ileal lipid binding protein. Lücke C, et al. Structure, 1996 Jul 15. PMID 8805562
    5. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gastrotropin
    Names
    ileal lipid-binding protein
    porcine ileal peptide

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214215.2 → NP_999380.2  gastrotropin

      Status: VALIDATED

      Source sequence(s)
      AK231219, BW983662, EW435209, J05136
      UniProtKB/Swiss-Prot
      P10289
      UniProtKB/TrEMBL
      A0A8D0TPC0
      Related
      ENSSSCP00000018050.3, ENSSSCT00000018550.5
      Conserved Domains (1) summary
      pfam14651
      Location:3 → 128
      Lipocalin_7; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

      Range
      63297594..63303675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P10289.3 GenPept UniProtKB/Swiss-Prot:P10289

    Gene LinkOut

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