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    HABP4 hyaluronan binding protein 4 [ Gallus gallus (chicken) ]

    Gene ID: 395444, updated on 3-Dec-2024

    Summary

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    Symbol
    HABP4provided by CGNC
    Full Name
    hyaluronan binding protein 4provided by CGNC
    Primary source
    CGNC:9584
    See related
    Ensembl:ENSGALG00010008879
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See HABP4 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (42790681..42812496)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (42790681..42812496)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member D2 Neighboring gene uncharacterized LOC124417499 Neighboring gene zinc finger protein 367 Neighboring gene uncharacterized LOC121108248 Neighboring gene cell division cycle 14B Neighboring gene AhpC/TSA antioxidant enzyme domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of a novel intracellular hyaluronan-binding protein. Huang L, et al. J Biol Chem, 2000 Sep 22. PMID 10887182
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intracellular hyaluronan-binding protein 4
    Names
    IHABP4
    intracellular hyaluronan-binding protein p57

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204705.2 → NP_990036.1  intracellular hyaluronan-binding protein 4

      See identical proteins and their annotated locations for NP_990036.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000094
      UniProtKB/Swiss-Prot
      Q9I9R0
      UniProtKB/TrEMBL
      A0A8V0XZH0
      Related
      ENSGALP00010012092.1, ENSGALT00010021091.1
      Conserved Domains (2) summary
      pfam04774
      Location:182 → 262
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:14 → 103
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      42790681..42812496
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015280241.4 → XP_015135727.1  intracellular hyaluronan-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XZH0
      Conserved Domains (2) summary
      pfam04774
      Location:182 → 262
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam16174
      Location:14 → 103
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      42790681..42812496
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046934711.1 → XP_046790667.1  intracellular hyaluronan-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XZH0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9I9R0.1 GenPept UniProtKB/Swiss-Prot:Q9I9R0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.