U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    glipr1b GLI pathogenesis-related 1b [ Danio rerio (zebrafish) ]

    Gene ID: 393547, updated on 4-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    glipr1bprovided by ZNC
    Official Full Name
    GLI pathogenesis-related 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1459
    See related
    Ensembl:ENSDARG00000030078 AllianceGenome:ZFIN:ZDB-GENE-040426-1459
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:65887
    Summary
    Orthologous to human GLIPR1 (GLI pathogenesis related 1) and GLIPR1L2 (GLIPR1 like 2). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See glipr1b in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (7345417..7355225)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (7386455..7396290)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene anoctamin 2a Neighboring gene ceramide synthase 3b Neighboring gene calcyphosine 2 Neighboring gene si:dkey-30c15.17 Neighboring gene Bardet-Biedl syndrome 10

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Hedgehog signaling regulates osteoblast differentiation in zebrafish larvae through modulation of autophagy. Hu Z, et al. Biol Open, 2019 May 1. PMID 30992325, Free PMC Article
    2. Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9. Liu J, et al. Development, 2015 Mar 15. PMID 25725064, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC65887

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    glioma pathogenesis-related protein 1b

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200575.1 → NP_956869.1  glioma pathogenesis-related protein 1b precursor

      See identical proteins and their annotated locations for NP_956869.1

      Status: PROVISIONAL

      Source sequence(s)
      BC056605
      UniProtKB/TrEMBL
      A0A8M1PHE4, Q6PHC5
      Related
      ENSDARP00000041428.4, ENSDART00000041429.5
      Conserved Domains (1) summary
      cd05385
      Location:32 → 177
      SCP_GLIPR-1_like; SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich ...

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      7345417..7355225
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159001.5 → XP_005159058.1  glioma pathogenesis-related protein 1b isoform X1

      UniProtKB/TrEMBL
      A0A8M2B5H0
      Conserved Domains (1) summary
      cl00133
      Location:32 → 185
      SCP; SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools