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    zgc:56106 zgc:56106 [ Danio rerio (zebrafish) ]

    Gene ID: 393163, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:56106provided by ZNC
    Official Full Name
    zgc:56106provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-904
    See related
    Ensembl:ENSDARG00000022564 AllianceGenome:ZFIN:ZDB-GENE-040426-904
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    smap
    Summary
    Orthologous to human C11orf58 (chromosome 11 open reading frame 58). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See zgc:56106 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (27309404..27316554, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (27327026..27334176, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 15B Neighboring gene pleckstrin homology domain containing, family A member 7a Neighboring gene si:dkey-29p10.4 Neighboring gene CD81 molecule b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC56106

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200194.1NP_956488.1  small acidic protein

      See identical proteins and their annotated locations for NP_956488.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045914
      UniProtKB/Swiss-Prot
      Q7ZVC9
      Related
      ENSDARP00000034658.4, ENSDART00000028294.5
      Conserved Domains (1) summary
      pfam15477
      Location:25101
      SMAP; Small acidic protein family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      27309404..27316554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)