U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Pcdha6 protocadherin alpha 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 393088, updated on 9-Dec-2024

    Summary

    Symbol
    Pcdha6provided by RGD
    Full Name
    protocadherin alpha 6provided by RGD
    Primary source
    RGD:735165
    See related
    AllianceGenome:RGD:735165
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    rCNRv06
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Orthologous to human PCDHA6 (protocadherin alpha 6). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    not in current annotation release
    Expression
    Biased expression in Brain (RPKM 149.2), Lung (RPKM 103.6) and 8 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protocadherin alpha-6
    Names
    cadherin-related neuronal receptor 6

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199506.1NP_955800.1  protocadherin alpha-6

      See identical proteins and their annotated locations for NP_955800.1

      Status: PROVISIONAL

      Source sequence(s)
      AB113389
      UniProtKB/TrEMBL
      F7F4E7, I6LBW5, Q767I6
      Conserved Domains (4) summary
      cd11304
      Location:263363
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08266
      Location:47128
      Cadherin_2; Cadherin-like
      pfam15974
      Location:812955
      Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
      pfam16492
      Location:711786
      Cadherin_C_2; Cadherin cytoplasmic C-terminal