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    Cpsf5 Cleavage and polyadenylation specific factor 5 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39083, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cpsf5provided by FlyBase
    Official Full Name
    Cleavage and polyadenylation specific factor 5provided by FlyBase
    Primary source
    FLYBASE:FBgn0288470
    Locus tag
    Dmel_CG3689
    See related
    AllianceGenome:FB:FBgn0288470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cdi12; Cdi12; CDI12; CF I[[m]]25; CFI25; CFIm25; CG3689; CPSF5; Dmel\CG3689
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be part of mRNA cleavage factor complex. Is expressed in embryonic brain; larval ventral nerve cord; and organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Cpsf5 in Genome Data Viewer
    Location:
    67B5-67B5; 3-29 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (9411038..9413835)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (9404138..9406737)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Cuticular protein 67B Neighboring gene uncharacterized protein Neighboring gene alpha-tubulin acetylase Neighboring gene uncharacterized protein Neighboring gene astray

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables mRNA 3'-UTR AU-rich region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cleavage and polyadenylation specific factor 5
    Names
    CG3689-PB
    CG3689-PC
    Cpsf5-PB
    Cpsf5-PC
    Cyclin-dependent kinase interactor 12

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      9411038..9413835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001043132.3 → NP_001036597.1  cleavage and polyadenylation specific factor 5, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036597.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E8G6
      Conserved Domains (1) summary
      pfam13869
      Location:45 → 232
      NUDIX_2; Nucleotide hydrolase

    2. NM_140051.3 → NP_648308.1  cleavage and polyadenylation specific factor 5, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648308.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T9F4, Q9VSY2
      Related
      FBpp0076184
      Conserved Domains (1) summary
      pfam13869
      Location:45 → 192
      NUDIX_2; Nucleotide hydrolase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0E8G6 Q0E8G6
    Q9VSY2 Q9VSY2

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