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    Gm5176 predicted gene 5176 [ Mus musculus (house mouse) ]

    Gene ID: 382421, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm5176provided by MGI
    Official Full Name
    predicted gene 5176provided by MGI
    Primary source
    MGI:MGI:3644450
    See related
    Ensembl:ENSMUSG00000111997 AllianceGenome:MGI:3644450
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG382421
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    Genomic context

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    See Gm5176 in Genome Data Viewer
    Location:
    10 D1; 10 58.7 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (111336649..111337206)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (111500788..111501345)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27868 Neighboring gene STARR-seq mESC enhancer starr_27869 Neighboring gene predicted gene, 30145 Neighboring gene STARR-seq mESC enhancer starr_27871 Neighboring gene STARR-seq mESC enhancer starr_27875 Neighboring gene STARR-positive B cell enhancer ABC_E5181 Neighboring gene STARR-positive B cell enhancer ABC_E6921 Neighboring gene STARR-positive B cell enhancer ABC_E10641 Neighboring gene nucleosome assembly protein 1-like 1 Neighboring gene predicted gene, 25117 Neighboring gene STARR-positive B cell enhancer ABC_E6922 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:110947179-110947288 Neighboring gene pleckstrin homology like domain, family A, member 1 Neighboring gene predicted gene, 53630

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • high mobility group box 2 pseudogene

    Clone Names

    • MGC60992

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033603.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC166253
      Related
      ENSMUST00000220267.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      111336649..111337206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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