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    xnf7.S Nuclear factor 7 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379381, updated on 20-Nov-2024

    Summary

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    Official Symbol
    xnf7.S
    Official Full Name
    Nuclear factor 7 S homeolog
    Primary source
    Xenbase:XB-GENE-6256071
    Locus tag
    XELAEV_18004555mg
    See related
    EnsemblRapid:ENSXLAG00005008394 AllianceGenome:Xenbase:XB-GENE-6256071
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    xnf7-a; xnf7-b; xnf7-o
    Summary
    Predicted to enable DNA binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination and regulation of DNA-templated transcription. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See xnf7.S in Genome Data Viewer
    Location:
    chromosome: 9_10S
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (112973665..112984518)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694878.1 (440420..451258, complement)

    Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase KAT8-like Neighboring gene zinc-binding protein A33 Neighboring gene branched chain ketoacid dehydrogenase kinase S homeolog Neighboring gene cardiotrophin-2 Neighboring gene F-box and leucine-rich repeat protein 19 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two forms of Xenopus nuclear factor 7 have overlapping spatial but different temporal patterns of expression during development. Gong SG, et al. Mech Dev, 1995 Aug. PMID 8541218
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC52568

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor 7, ovary

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086225.2 → NP_001079694.2  nuclear factor 7, ovary

      See identical proteins and their annotated locations for NP_001079694.2

      Status: PROVISIONAL

      Source sequence(s)
      S80988
      UniProtKB/Swiss-Prot
      Q801R9, Q91431
      UniProtKB/TrEMBL
      A9JS19
      Related
      ENSXLAP00005024252.1, ENSXLAT00005024961.1
      Conserved Domains (6) summary
      smart00336
      Location:224 → 261
      BBOX; B-Box-type zinc finger
      pfam11717
      Location:20 → 76
      Tudor-knot; RNA binding activity-knot of a chromodomain
      pfam15227
      Location:146 → 185
      zf-C3HC4_4; zinc finger of C3HC4-type, RING
      cd13733
      Location:437 → 605
      SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
      cl17182
      Location:54 → 155
      NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate
      cl23765
      Location:274 → 394
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      112973665..112984518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91431.1 GenPept UniProtKB/Swiss-Prot:Q91431

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