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    si:ch211-14a17.11 si:ch211-14a17.11 [ Danio rerio (zebrafish) ]

    Gene ID: 368892, updated on 4-Jan-2025

    Summary

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    Official Symbol
    si:ch211-14a17.11provided by ZNC
    Official Full Name
    si:ch211-14a17.11provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030616-582
    See related
    Ensembl:ENSDARG00000054292 AllianceGenome:ZFIN:ZDB-GENE-030616-582
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:110048; si:zc14a17.11
    Summary
    Orthologous to human C14orf119 (chromosome 14 open reading frame 119). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See si:ch211-14a17.11 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (38225427..38230008)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (38243099..38247680)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 14b (membrane-inserted) Neighboring gene apoptotic chromatin condensation inducer 1a Neighboring gene si:ch211-14a17.10 Neighboring gene myosin-6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A subtracted cDNA library from the zebrafish (Danio rerio) embryonic inner ear. Coimbra RS, et al. Genome Res, 2002 Jun. PMID 12045154, Free PMC Article
    2. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C14orf119 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007177.3 → NP_001007178.3  uncharacterized protein C14orf119 homolog

      See identical proteins and their annotated locations for NP_001007178.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      EH457304, EH483028, EH579318
      UniProtKB/TrEMBL
      A0A8M1N317, B0R0G9
      Related
      ENSDARP00000123563.1, ENSDART00000131384.2
      Conserved Domains (1) summary
      pfam14969
      Location:90 → 185
      DUF4508; Domain of unknown function (DUF4508)

    2. NM_001244794.1 → NP_001231723.1  uncharacterized protein C14orf119 homolog

      See identical proteins and their annotated locations for NP_001231723.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      EH542924, EH566460
      UniProtKB/TrEMBL
      A0A8M1N317, B0R0G9
      Conserved Domains (1) summary
      pfam14969
      Location:90 → 185
      DUF4508; Domain of unknown function (DUF4508)

    3. NM_001244795.1 → NP_001231724.1  uncharacterized protein C14orf119 homolog

      See identical proteins and their annotated locations for NP_001231724.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      EH434218, EH581416, EH608736
      UniProtKB/TrEMBL
      A0A8M1N317, B0R0G9
      Related
      ENSDARP00000136490.1, ENSDART00000159396.2
      Conserved Domains (1) summary
      pfam14969
      Location:90 → 185
      DUF4508; Domain of unknown function (DUF4508)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      38225427..38230008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223255.1 → XP_068079356.1  uncharacterized protein C14orf119 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M1N317, B0R0G9

    2. XM_068223256.1 → XP_068079357.1  uncharacterized protein C14orf119 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M1N317, B0R0G9

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394506.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      269989..274564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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