R3hdml R3H domain containing-like [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: R3hdmlprovided by RGD
Official Full Name: R3H domain containing-likeprovided by RGD
Primary source: RGD:1305296
See related: EnsemblRapid:ENSRNOG00000027432 AllianceGenome:RGD:1305296
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be active in extracellular space. Orthologous to human R3HDML (R3H domain containing like). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Low expression observed in reference dataset See more
Orthologs: human mouse all
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Genomic context

Location:: 3q42

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (172590815..172601584)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (152171382..152182151)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (159886248..159898024)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: peptidase inhibitor R3HDML

Names: R3H domain (binds single-stranded nucleic acids) containing-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001108962.1 → NP_001102432.1 peptidase inhibitor R3HDML precursor

See identical proteins and their annotated locations for NP_001102432.1

Status: PROVISIONAL

Source sequence(s)

CH474005

UniProtKB/TrEMBL

A6JX33, D3ZBM0

Related

ENSRNOP00000036301.5, ENSRNOT00000031868.7

Conserved Domains (1) summary

cl00133
Location:65 → 207

SCP; SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in ...