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    4933427D14Rikl RIKEN cDNA 4933427D14 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360560, updated on 9-Dec-2024

    Summary

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    Official Symbol
    4933427D14Riklprovided by RGD
    Official Full Name
    RIKEN cDNA 4933427D14 gene likeprovided by RGD
    Primary source
    RGD:1304728
    See related
    EnsemblRapid:ENSRNOG00000014027 AllianceGenome:RGD:1304728
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304728
    Summary
    Predicted to be involved in cytosolic ciliogenesis and protein localization to centrosome. Predicted to be located in centrosome and cytosol. Predicted to be active in centriolar satellite. Human ortholog(s) of this gene implicated in Joubert syndrome; asphyxiating thoracic dystrophy; and orofaciodigital syndrome. Orthologous to human KIAA0753 (KIAA0753). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 47.0), Kidney (RPKM 42.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See 4933427D14Rikl in Genome Data Viewer
    Location:
    10q24
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (57282433..57331259, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (56783869..56832668, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (58726721..58776718, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene aryl hydrocarbon receptor-interacting protein-like 1 Neighboring gene PICALM interacting mitotic regulator Neighboring gene PITPNM family member 3 Neighboring gene uncharacterized LOC134480818 Neighboring gene thioredoxin domain containing 17 Neighboring gene mediator complex subunit 31

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Centriolar satellites assemble centrosomal microcephaly proteins to recruit CDK2 and promote centriole duplication. Kodani A, et al. Elife, 2015 Aug 22. PMID 26297806, Free PMC Article
    2. Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. Jakobsen L, et al. EMBO J, 2011 Apr 20. PMID 21399614, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in centriole replication IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cilium assembly ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in cytosolic ciliogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in protein localization to centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein localization to centrosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in centriolar satellite IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in microtubule organizing center IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein moonraker

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427204.1 → NP_001414133.1  protein moonraker

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A0A8I5ZZR0
      Related
      ENSRNOP00000084624.1, ENSRNOT00000115682.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      57282433..57331259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063269346.1 → XP_063125416.1  protein moonraker isoform X3

      UniProtKB/TrEMBL
      D3ZNS7
      Related
      ENSRNOP00000111341.1, ENSRNOT00000157103.1

    2. XM_063269348.1 → XP_063125418.1  protein moonraker isoform X5

    3. XM_063269349.1 → XP_063125419.1  protein moonraker isoform X5

    4. XM_063269345.1 → XP_063125415.1  protein moonraker isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZZR0

    5. XM_063269343.1 → XP_063125413.1  protein moonraker isoform X1

    6. XM_063269344.1 → XP_063125414.1  protein moonraker isoform X1

    7. XM_063269347.1 → XP_063125417.1  protein moonraker isoform X4

    8. XM_063269342.1 → XP_063125412.1  protein moonraker isoform X1

    9. XM_063269351.1 → XP_063125421.1  protein moonraker isoform X6

    RNA

    1. XR_010055205.1 RNA Sequence

    2. XR_010055206.1 RNA Sequence

    3. XR_010055207.1 RNA Sequence

    4. XR_010055208.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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