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    ccdc28a coiled-coil domain containing 28A [ Danio rerio (zebrafish) ]

    Gene ID: 326808, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ccdc28aprovided by ZNC
    Official Full Name
    coiled-coil domain containing 28Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5007
    See related
    Ensembl:ENSDARG00000022983 AllianceGenome:ZFIN:ZDB-GENE-030131-5007
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:63962; wu:fe24b05
    Summary
    Orthologous to several human genes including ECT2L (epithelial cell transforming 2 like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc28a in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (33409038..33416023, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (33456521..33463513, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene zgc:162964 Neighboring gene epithelial cell transforming 2 like Neighboring gene synaptosome associated protein 23.1 Neighboring gene synaptosome associated protein 23.2 Neighboring gene uncharacterized LOC137488121

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of CCDC28B reveals its role in ciliogenesis and provides insight to understand its modifier effect on Bardet-Biedl syndrome. Cardenas-Rodriguez M, et al. Hum Genet, 2013 Jan. PMID 23015189
    2. Spatio-temporal regulation of Wnt and retinoic acid signaling by tbx16/spadetail during zebrafish mesoderm differentiation. Mueller RL, et al. BMC Genomics, 2010 Sep 9. PMID 20828405, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 28A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199748.1 → NP_956042.1  coiled-coil domain-containing protein 28A

      See identical proteins and their annotated locations for NP_956042.1

      Status: PROVISIONAL

      Source sequence(s)
      BC053169
      UniProtKB/TrEMBL
      Q7T3C8
      Related
      ENSDARP00000028520.3, ENSDART00000034638.5
      Conserved Domains (1) summary
      pfam13270
      Location:79 → 151
      DUF4061; Domain of unknown function (DUF4061)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      33409038..33416023 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005158720.5 → XP_005158777.1  coiled-coil domain-containing protein 28A isoform X1

      UniProtKB/TrEMBL
      A0A8M2B561
      Related
      ENSDARP00000113435.1, ENSDART00000140149.2
      Conserved Domains (1) summary
      pfam13270
      Location:108 → 180
      DUF4061; Domain of unknown function (DUF4061)
    Nucleotide Protein Strain
    Heading Accession and Version

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