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    Yipf3 Yip1 domain family, member 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301245, updated on 9-Dec-2024

    Summary

    Official Symbol
    Yipf3provided by RGD
    Official Full Name
    Yip1 domain family, member 3provided by RGD
    Primary source
    RGD:1308185
    See related
    EnsemblRapid:ENSRNOG00000018998 AllianceGenome:RGD:1308185
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    KLIP1; C6orf109; LRRGT00110; RGD1308185
    Summary
    Predicted to be involved in cell differentiation. Predicted to be located in transport vesicle. Predicted to be active in Golgi apparatus. Orthologous to human YIPF3 (Yip1 domain family member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 135.3), Kidney (RPKM 126.4) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Yipf3 in Genome Data Viewer
    Location:
    9q12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (22227867..22233177, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (14730289..14735644, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (17115308..17120659, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene tight junction associated protein 1 Neighboring gene leucine rich repeat containing 73 Neighboring gene RNA polymerase I and III subunit C Neighboring gene exportin 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC94695

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in transport vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in transport vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein YIPF3
    Names
    YIP1 family member 3
    liver regeneration-related protein LRRGT00110
    natural killer cell-specific antigen KLIP1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007801.2NP_001007802.1  protein YIPF3

      See identical proteins and their annotated locations for NP_001007802.1

      Status: PROVISIONAL

      Source sequence(s)
      BC087102
      UniProtKB/Swiss-Prot
      Q6TUD4
      UniProtKB/TrEMBL
      A0A8I6AAV8
      Related
      ENSRNOP00000025769.3, ENSRNOT00000025769.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      22227867..22233177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017596328.3XP_017451817.1  protein YIPF3 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AAV8
    2. XM_063266849.1XP_063122919.1  protein YIPF3 isoform X3

      UniProtKB/TrEMBL
      A6JIS5
    3. XM_063266848.1XP_063122918.1  protein YIPF3 isoform X2