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    Mgat4c MGAT4 family, member C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299756, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Mgat4cprovided by RGD
    Official Full Name
    MGAT4 family, member Cprovided by RGD
    Primary source
    RGD:1307871
    See related
    EnsemblRapid:ENSRNOG00000004149 AllianceGenome:RGD:1307871
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307871
    Summary
    Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Orthologous to human MGAT4C (MGAT4 family member C). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 42.8), Testes (RPKM 22.0) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Mgat4c in Genome Data Viewer
    Location:
    7q21
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (38596117..39361103)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (36709564..37485810)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (43249369..44024278)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S13, pseudogene 9 Neighboring gene uncharacterized LOC120093573 Neighboring gene arginine and serine rich coiled-coil 1, pseudogene 1 Neighboring gene uncharacterized LOC134479677 Neighboring gene uncharacterized LOC134479676 Neighboring gene uncharacterized LOC100910482 Neighboring gene neurotensin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables acetylglucosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in protein N-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C
    Names
    mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
    NP_001129286.1
    XP_017450226.2
    XP_038934627.1
    XP_038934628.1
    XP_038934630.1
    XP_063119276.1
    XP_063119277.1
    XP_063119278.1
    XP_063119279.1
    XP_063119280.1
    XP_063119281.1
    XP_063119282.1
    XP_063119284.1
    XP_063119285.1
    XP_063119286.1
    XP_063119287.1
    XP_063119288.1
    XP_063119289.1
    XP_063119290.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135814.1 → NP_001129286.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

      See identical proteins and their annotated locations for NP_001129286.1

      Status: INFERRED

      Source sequence(s)
      CH473960
      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3
      Conserved Domains (1) summary
      pfam04666
      Location:64 → 330
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      38596117..39361103
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078699.2 → XP_038934627.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3
      Conserved Domains (1) summary
      pfam04666
      Location:64 → 330
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    2. XM_063263216.1 → XP_063119286.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    3. XM_017594737.3 → XP_017450226.2  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3
      Related
      ENSRNOP00000110863.1, ENSRNOT00000144018.1
      Conserved Domains (1) summary
      pfam04666
      Location:64 → 330
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    4. XM_039078702.2 → XP_038934630.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2

      Conserved Domains (1) summary
      cl04660
      Location:64 → 269
      PGAP4-like; Post-GPI attachment to proteins factor 4 and similar proteins

    5. XM_063263212.1 → XP_063119282.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    6. XM_063263211.1 → XP_063119281.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    7. XM_063263210.1 → XP_063119280.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    8. XM_063263209.1 → XP_063119279.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    9. XM_063263208.1 → XP_063119278.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    10. XM_063263215.1 → XP_063119285.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    11. XM_039078700.2 → XP_038934628.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3
      Conserved Domains (1) summary
      pfam04666
      Location:64 → 330
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    12. XM_063263214.1 → XP_063119284.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    13. XM_063263207.1 → XP_063119277.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3

    14. XM_063263217.1 → XP_063119287.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3
      Related
      ENSRNOP00000005523.8, ENSRNOT00000005523.9

    15. XM_063263218.1 → XP_063119288.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2

    16. XM_063263206.1 → XP_063119276.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

      UniProtKB/TrEMBL
      A6IGA6, D3ZEV3
      Related
      ENSRNOP00000105158.1, ENSRNOT00000146894.1

    17. XM_063263220.1 → XP_063119290.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X3

    18. XM_063263219.1 → XP_063119289.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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